This is the development version of easylift; for the stable release version, see easylift.
An R package to perform genomic liftoverBioconductor version: Development (3.22)
The easylift package provides a convenient tool for genomic liftover operations between different genome assemblies. It seamlessly works with Bioconductor's GRanges objects and chain files from the UCSC Genome Browser, allowing for straightforward handling of genomic ranges across various genome versions. One noteworthy feature of easylift is its integration with the BiocFileCache package. This integration automates the management and caching of chain files necessary for liftover operations. Users no longer need to manually specify chain file paths in their function calls, reducing the complexity of the liftover process.
Author: Abdullah Al Nahid [aut, cre] ORCID: 0000-0002-4390-0768 , Hervé Pagès [aut, rev], Michael Love [aut, rev] ORCID: 0000-0001-8401-0545
Maintainer: Abdullah Al Nahid <abdnahid56 at gmail.com>
Citation (from within R, entercitation("easylift")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("easylift")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("easylift")Follow Installation instructions to use this package in your R session.
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