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Showing content from https://www.bioconductor.org/packages/devel/bioc/html/decontam.html below:

Bioconductor - decontam (development version)

This is the development version of decontam; for the stable release version, see decontam.

Bioconductor version: Development (3.22)

Simple statistical identification of contaminating sequence features in marker-gene or metagenomics data. Works on any kind of feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic groups, MAGs,...). Requires DNA quantitation data or sequenced negative control samples.

Author: Benjamin Callahan [aut, cre], Nicole Marie Davis [aut], Felix G.M. Ernst [ctb] ORCID: 0000-0001-5064-0928

Maintainer: Benjamin Callahan <benjamin.j.callahan at gmail.com>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("decontam")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("decontam")

Follow Installation instructions to use this package in your R session.

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