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Bioconductor - customCMPdb (development version)

customCMPdb

This is the development version of customCMPdb; for the stable release version, see customCMPdb.

Customize and Query Compound Annotation Database

Bioconductor version: Development (3.22)

This package serves as a query interface for important community collections of small molecules, while also allowing users to include custom compound collections.

Author: Yuzhu Duan [aut, cre], Thomas Girke [aut]

Maintainer: Yuzhu Duan <yduan004 at ucr.edu>

Citation (from within R, enter citation("customCMPdb")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("customCMPdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("customCMPdb")
Details biocViews AnnotationHubSoftware, Cheminformatics, Software Version 1.19.0 In Bioconductor since BioC 3.12 (R-4.0) (4.5 years) License Artistic-2.0 Depends R (>= 4.0) Imports AnnotationHub, RSQLite, XML, utils, ChemmineR, methods, stats, rappdirs, BiocFileCache System Requirements URL https://github.com/yduan004/customCMPdb/ Bug Reports https://github.com/yduan004/customCMPdb/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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