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Bioconductor - compEpiTools (development version)

compEpiTools

This is the development version of compEpiTools; for the stable release version, see compEpiTools.

Tools for computational epigenomics

Bioconductor version: Development (3.22)

Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.

Author: Mattia Pelizzola [aut], Kamal Kishore [aut], Mattia Furlan [ctb, cre]

Maintainer: Mattia Furlan <mattia.furlan at iit.it>

Citation (from within R, enter citation("compEpiTools")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("compEpiTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation Details biocViews Coverage, GeneExpression, GenomeAnnotation, Sequencing, Software, Visualization Version 1.43.0 In Bioconductor since BioC 3.0 (R-3.1) (10.5 years) License GPL Depends R (>= 3.1.1), methods, topGO, GenomicRanges Imports AnnotationDbi, BiocGenerics, Biostrings, Rsamtools, parallel, grDevices, gplots, IRanges, GenomicFeatures, XVector, methylPipe, GO.db, S4Vectors, GenomeInfoDb System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Windows Binary (x86_64) macOS Binary (x86_64) macOS Binary (arm64) Source Repository git clone https://git.bioconductor.org/packages/compEpiTools Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/compEpiTools Package Short Url https://bioconductor.org/packages/compEpiTools/ Package Downloads Report Download Stats

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