This is the development version of biodb; for the stable release version, see biodb.
Biodb, a Library and a Development Framework for Connecting to Chemical and Biological DatabasesBioconductor version: Development (3.22)
The biodb package provides access to standard remote chemical and biological databases (ChEBI, KEGG, HMDB, ...), as well as to in-house local database files (CSV, SQLite), with easy retrieval of entries, access to web services, search of compounds by mass and/or name, and mass spectra matching for LCMS and MSMS. Its architecture as a development framework facilitates the development of new database connectors for local projects or inside separate published packages.
Author: Pierrick Roger [aut, cre] ORCID: 0000-0001-8177-4873 , Alexis Delabrière [ctb] ORCID: 0000-0003-3308-4549
Maintainer: Pierrick Roger <pierrick.roger at cea.fr>
Citation (from within R, entercitation("biodb")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("biodb")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biodb")Follow Installation instructions to use this package in your R session.
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