A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from https://www.bioconductor.org/packages/devel/bioc/html/bedbaser.html below:

Bioconductor - bedbaser (development version)

bedbaser

This is the development version of bedbaser; for the stable release version, see bedbaser.

A BEDbase client

Bioconductor version: Development (3.22)

A client for BEDbase. bedbaser provides access to the API at api.bedbase.org. It also includes convenience functions to import BED files into GRanges objects and BEDsets into GRangesLists.

Author: Andres Wokaty [aut, cre] ORCID: 0009-0008-0900-8793 , Levi Waldron [aut] ORCID: 0000-0003-2725-0694

Maintainer: Andres Wokaty <jennifer.wokaty at sph.cuny.edu>

Citation (from within R, enter citation("bedbaser")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("bedbaser")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bedbaser")
Details biocViews DataImport, Software, ThirdPartyClient Version 1.1.0 In Bioconductor since BioC 3.21 (R-4.5) (< 6 months) License Artistic License 2.0 Depends R (>= 4.1.0) Imports AnVIL(>= 1.16.0), BiocFileCache, dplyr, GenomeInfoDb, GenomicRanges, httr, methods, purrr, rtracklayer, rlang, R.utils, stats, stringr, tibble, tidyr, tools, utils System Requirements URL https://github.com/waldronlab/bedbaser Bug Reports https://github.com/waldronlab/bedbaser/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4