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Bioconductor - beachmat.hdf5 (development version)

beachmat.hdf5

This is the development version of beachmat.hdf5; for the stable release version, see beachmat.hdf5.

beachmat bindings for HDF5-backed matrices

Bioconductor version: Development (3.22)

Extends beachmat to support initialization of tatami matrices from HDF5-backed arrays. This allows C++ code in downstream packages to directly call the HDF5 C/C++ library to access array data, without the need for block processing via DelayedArray. Some utilities are also provided for direct creation of an in-memory tatami matrix from a HDF5 file.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("beachmat.hdf5")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("beachmat.hdf5")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beachmat.hdf5")
Details See More Suggests testthat, BiocStyle, knitr, rmarkdown, rhdf5, Matrix Linking To Rcpp, assorthead, beachmat, Rhdf5lib Enhances Depends On Me Imports Me Suggests Me beachmat, epiregulon, sketchR Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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