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Bioconductor - VanillaICE (development version)

VanillaICE

This is the development version of VanillaICE; for the stable release version, see VanillaICE.

A Hidden Markov Model for high throughput genotyping arrays

Bioconductor version: Development (3.22)

Hidden Markov Models for characterizing chromosomal alteration in high throughput SNP arrays.

Author: Robert Scharpf [aut, cre]

Maintainer: Robert Scharpf <rscharpf at jhu.edu>

Citation (from within R, enter citation("VanillaICE")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("VanillaICE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("VanillaICE")
Details biocViews CopyNumberVariation, Software Version 1.71.0 In Bioconductor since BioC 2.1 (R-2.6) (18 years) License LGPL-2 Depends R (>= 3.5.0), BiocGenerics(>= 0.13.6), GenomicRanges(>= 1.27.6), SummarizedExperiment(>= 1.5.3) Imports MatrixGenerics, Biobase, S4Vectors(>= 0.23.18), IRanges(>= 1.14.0), oligoClasses(>= 1.31.1), foreach, matrixStats, data.table, grid, lattice, methods, GenomeInfoDb(>= 1.11.4), crlmm, tools, stats, utils, BSgenome.Hsapiens.UCSC.hg18 System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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