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Bioconductor - UniProt.ws (development version)

UniProt.ws

This is the development version of UniProt.ws; for the stable release version, see UniProt.ws.

R Interface to UniProt Web Services

Bioconductor version: Development (3.22)

The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. This package provides a collection of functions for retrieving, processing, and re-packaging UniProt web services. The package makes use of UniProt's modernized REST API and allows mapping of identifiers accross different databases.

Author: Marc Carlson [aut], Csaba Ortutay [ctb], Marcel Ramos [aut, cre] ORCID: 0000-0002-3242-0582

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("UniProt.ws")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("UniProt.ws")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("UniProt.ws")
UniProt.ws: A package for retrieving data from the UniProt web service HTML R Script Reference Manual PDF NEWS Text Details biocViews Annotation, BioCarta, GO, Infrastructure, KEGG, Software Version 2.49.3 In Bioconductor since BioC 2.12 (R-3.0) (12.5 years) License Artistic-2.0 Depends R (>= 4.5.0) Imports AnnotationDbi, BiocFileCache, BiocBaseUtils, BiocGenerics, httr2, jsonlite, methods, progress, rjsoncons, rlang, utils System Requirements URL https://github.com/Bioconductor/UniProt.ws Bug Reports https://github.com/Bioconductor/UniProt.ws/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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