This is the development version of Scale4C; for the stable release version, see Scale4C.
Scale4C: an R/Bioconductor package for scale-space transformation of 4C-seq dataBioconductor version: Development (3.22)
Scale4C is an R/Bioconductor package for scale-space transformation and visualization of 4C-seq data. The scale-space transformation is a multi-scale visualization technique to transform a 2D signal (e.g. 4C-seq reads on a genomic interval of choice) into a tesselation in the scale space (2D, genomic position x scale factor) by applying different smoothing kernels (Gauss, with increasing sigma). This transformation allows for explorative analysis and comparisons of the data's structure with other samples.
Author: Carolin Walter
Maintainer: Carolin Walter <carolin.walter at uni-muenster.de>
Citation (from within R, entercitation("Scale4C")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Scale4C")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Scale4C")Follow Installation instructions to use this package in your R session.
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