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Bioconductor - STRINGdb (development version)

STRINGdb

This is the development version of STRINGdb; for the stable release version, see STRINGdb.

STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment Analysis

Bioconductor version: Development (3.22)

The STRINGdb package provides a R interface to the STRING protein-protein interactions database (https://string-db.org).

Author: Andrea Franceschini <andrea.franceschini at isb-sib.ch>

Maintainer: Damian Szklarczyk <damian.szklarczyk at imls.uzh.ch>

Citation (from within R, enter citation("STRINGdb")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("STRINGdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STRINGdb")
Details biocViews Network, Software Version 2.21.0 In Bioconductor since BioC 2.13 (R-3.0) (11.5 years) License GPL-2 Depends R (>= 2.14.0) Imports png, sqldf, plyr, igraph, httr, methods, RColorBrewer, gplots, hash, plotrix System Requirements URL See More Suggests RUnit, BiocGenerics Linking To Enhances Depends On Me PPInfer Imports Me GeDi, IMMAN, RITAN, TDbasedUFEadv, XINA, crosstalkr, DeSciDe Suggests Me epiNEM, GeneNetworkBuilder, martini, netSmooth, PCAN, protti Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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