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Bioconductor - Rtpca (development version)

Rtpca

This is the development version of Rtpca; for the stable release version, see Rtpca.

Thermal proximity co-aggregation with R

Bioconductor version: Development (3.22)

R package for performing thermal proximity co-aggregation analysis with thermal proteome profiling datasets to analyse protein complex assembly and (differential) protein-protein interactions across conditions.

Author: Nils Kurzawa [aut, cre], André Mateus [aut], Mikhail M. Savitski [aut]

Maintainer: Nils Kurzawa <nilskurzawa at gmail.com>

Citation (from within R, enter citation("Rtpca")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Rtpca")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rtpca")
Details biocViews DataImport, Proteomics, Software Version 1.19.0 In Bioconductor since BioC 3.12 (R-4.0) (4.5 years) License GPL-3 Depends R (>= 4.0.0), stats, dplyr, tidyr Imports Biobase, methods, ggplot2, pROC, fdrtool, splines, utils, tibble System Requirements URL Bug Reports https://support.bioconductor.org/ See More Package Archives

Follow Installation instructions to use this package in your R session.


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