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Bioconductor - Rhtslib (development version)

Rhtslib

This is the development version of Rhtslib; for the stable release version, see Rhtslib.

HTSlib high-throughput sequencing library as an R package

Bioconductor version: Development (3.22)

This package provides version 1.18 of the 'HTSlib' C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package="Rhtslib", "Rhtslib").

Author: Nathaniel Hayden [led, aut], Martin Morgan [aut], Hervé Pagès [aut, cre], Tomas Kalibera [ctb], Jeroen Ooms [ctb]

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("Rhtslib")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Rhtslib")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rhtslib")
Details See More Suggests knitr, rmarkdown, BiocStyle Linking To Enhances Depends On Me Imports Me deepSNV, diffHic, maftools, mitoClone2, scPipe Suggests Me Links To Me bamsignals, csaw, deepSNV, DiffBind, diffHic, epialleleR, FLAMES, h5vc, maftools, methylKit, mitoClone2, podkat, QuasR, raer, Rsamtools, scPipe, ShortRead, VariantAnnotation, jackalope Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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