This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This is the development version of Rfastp; for the stable release version, see Rfastp.
An Ultra-Fast and All-in-One Fastq Preprocessor (Quality Control, Adapter, low quality and polyX trimming) and UMI Sequence Parsing).Bioconductor version: Development (3.22)
Rfastp is an R wrapper of fastp developed in c++. fastp performs quality control for fastq files. including low quality bases trimming, polyX trimming, adapter auto-detection and trimming, paired-end reads merging, UMI sequence/id handling. Rfastp can concatenate multiple files into one file (like shell command cat) and accept multiple files as input.
Author: Wei Wang [aut] ORCID: 0000-0002-3216-7118 , Ji-Dung Luo [ctb] ORCID: 0000-0003-0150-1440 , Thomas Carroll [cre, aut] ORCID: 0000-0002-0073-1714
Maintainer: Thomas Carroll <tc.infomatics at gmail.com>
Citation (from within R, entercitation("Rfastp")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Rfastp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation Details See More Package ArchivesFollow Installation instructions to use this package in your R session.
Source Package Windows Binary (x86_64) macOS Binary (x86_64) macOS Binary (arm64) Source Repository git clone https://git.bioconductor.org/packages/Rfastp Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rfastp Package Short Url https://bioconductor.org/packages/Rfastp/ Package Downloads Report Download StatsRetroSearch is an open source project built by @garambo | Open a GitHub Issue
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