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Bioconductor - RSVSim (development version)

RSVSim

This is the development version of RSVSim; for the stable release version, see RSVSim.

RSVSim: an R/Bioconductor package for the simulation of structural variations

Bioconductor version: Development (3.22)

RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <c.bartenhagen at uni-koeln.de>

Citation (from within R, enter citation("RSVSim")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RSVSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RSVSim")
RSVSim: an R/Bioconductor package for the simulation of structural variations PDF R Script Reference Manual PDF Details See More Package Archives

Follow Installation instructions to use this package in your R session.


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