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Bioconductor - RDRToolbox (development version)

RDRToolbox

This is the development version of RDRToolbox; for the stable release version, see RDRToolbox.

A package for nonlinear dimension reduction with Isomap and LLE.

Bioconductor version: Development (3.22)

A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <c.bartenhagen at uni-koeln.de>

Citation (from within R, enter citation("RDRToolbox")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RDRToolbox")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RDRToolbox")
A package for nonlinear dimension reduction with Isomap and LLE. PDF R Script Reference Manual PDF Details biocViews Clustering, DimensionReduction, FeatureExtraction, Microarray, Software, Visualization Version 1.59.0 In Bioconductor since BioC 2.7 (R-2.12) (14.5 years) License GPL (>= 2) Depends R (>= 2.9.0) Imports graphics, grDevices, methods, stats, MASS, rgl System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.


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