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Bioconductor - Polytect (development version)

Polytect

This is the development version of Polytect; for the stable release version, see Polytect.

An R package for digital data clustering

Bioconductor version: Development (3.22)

Polytect is an advanced computational tool designed for the analysis of multi-color digital PCR data. It provides automatic clustering and labeling of partitions into distinct groups based on clusters first identified by the flowPeaks algorithm. Polytect is particularly useful for researchers in molecular biology and bioinformatics, enabling them to gain deeper insights into their experimental results through precise partition classification and data visualization.

Author: Yao Chen [aut, cre] ORCID: 0000-0001-8172-3996

Maintainer: Yao Chen <emmachentar at live.com>

Citation (from within R, enter citation("Polytect")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Polytect")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Polytect")
Details biocViews Classification, Clustering, MultiChannel, Software, ddPCR Version 1.1.0 In Bioconductor since BioC 3.21 (R-4.5) (< 6 months) License Artistic-2.0 Depends R (>= 4.4.0) Imports stats, utils, grDevices, mvtnorm, sn, dplyr, flowPeaks, ggplot2, tidyverse, cowplot, mlrMBO, DiceKriging, smoof, ParamHelpers, lhs, rgenoud, BiocManager System Requirements URL https://github.com/emmachenlingo/Polytect Bug Reports https://github.com/emmachenlingo/Polytect/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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