This is the development version of PhenoGeneRanker; for the stable release version, see PhenoGeneRanker.
PhenoGeneRanker: A gene and phenotype prioritization toolBioconductor version: Development (3.22)
This package is a gene/phenotype prioritization tool that utilizes multiplex heterogeneous gene phenotype network. PhenoGeneRanker allows multi-layer gene and phenotype networks. It also calculates empirical p-values of gene/phenotype ranking using random stratified sampling of genes/phenotypes based on their connectivity degree in the network. https://dl.acm.org/doi/10.1145/3307339.3342155.
Author: Cagatay Dursun [aut, cre]
Maintainer: Cagatay Dursun <cagataydursun at gmail.com>
Citation (from within R, entercitation("PhenoGeneRanker")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("PhenoGeneRanker")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PhenoGeneRanker")Follow Installation instructions to use this package in your R session.
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