This is the development version of Pedixplorer; for the stable release version, see Pedixplorer.
Pedigree FunctionsBioconductor version: Development (3.22)
Routines to handle family data with a Pedigree object. The initial purpose was to create correlation structures that describe family relationships such as kinship and identity-by-descent, which can be used to model family data in mixed effects models, such as in the coxme function. Also includes a tool for Pedigree drawing which is focused on producing compact layouts without intervention. Recent additions include utilities to trim the Pedigree object with various criteria, and kinship for the X chromosome.
Author: Louis Le Nezet [aut, cre, ctb] ORCID: 0009-0000-0202-2703 , Jason Sinnwell [aut], Terry Therneau [aut], Daniel Schaid [ctb], Elizabeth Atkinson [ctb]
Maintainer: Louis Le Nezet <louislenezet at gmail.com>
Citation (from within R, entercitation("Pedixplorer")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Pedixplorer")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Pedixplorer")Follow Installation instructions to use this package in your R session.
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