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Bioconductor - Path2PPI (development version)

Path2PPI

This is the development version of Path2PPI; for the stable release version, see Path2PPI.

Prediction of pathway-related protein-protein interaction networks

Bioconductor version: Development (3.22)

Package to predict protein-protein interaction (PPI) networks in target organisms for which only a view information about PPIs is available. Path2PPI predicts PPI networks based on sets of proteins which can belong to a certain pathway from well-established model organisms. It helps to combine and transfer information of a certain pathway or biological process from several reference organisms to one target organism. Path2PPI only depends on the sequence similarity of the involved proteins.

Author: Oliver Philipp [aut, cre], Ina Koch [ctb]

Maintainer: Oliver Philipp <contact at oliverphilipp.info>

Citation (from within R, enter citation("Path2PPI")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Path2PPI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Path2PPI")
Details See More Package Archives

Follow Installation instructions to use this package in your R session.


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