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Bioconductor - OrganismDbi (development version)

OrganismDbi

This is the development version of OrganismDbi; for the stable release version, see OrganismDbi.

Software to enable the smooth interfacing of different database packages

Bioconductor version: Development (3.22)

The package enables a simple unified interface to several annotation packages each of which has its own schema by taking advantage of the fact that each of these packages implements a select methods.

Author: Marc Carlson [aut], Martin Morgan [aut], Valerie Obenchain [aut], Aliyu Atiku Mustapha [ctb] (Converted 'OrganismDbi' vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("OrganismDbi")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("OrganismDbi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OrganismDbi")

OrganismDbi: A meta framework for Annotation Packages HTML R Script Reference Manual PDF NEWS Text Details biocViews Annotation, Infrastructure, Software Version 1.51.4 In Bioconductor since BioC 2.11 (R-2.15) (13 years) License Artistic-2.0 Depends R (>= 2.14.0), BiocGenerics(>= 0.15.10), AnnotationDbi(>= 1.33.15), Seqinfo, GenomicFeatures(>= 1.61.4) Imports methods, utils, stats, DBI, BiocManager, Biobase, graph, RBGL, S4Vectors, IRanges, GenomicRanges(>= 1.61.1) System Requirements URL See More Suggests txdbmaker, GenomeInfoDbData, Homo.sapiens, Rattus.norvegicus, BSgenome.Hsapiens.UCSC.hg19, AnnotationHub, FDb.UCSC.tRNAs, rtracklayer, biomaRt, RUnit, RMariaDB, BiocStyle, knitr Linking To Enhances Depends On Me Homo.sapiens, Mus.musculus, Rattus.norvegicus Imports Me AnnotationHubData, epivizrData, ggbio, uncoverappLib Suggests Me ChIPpeakAnno, epivizrStandalone Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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