This is the development version of MungeSumstats; for the stable release version, see MungeSumstats.
Standardise summary statistics from GWASBioconductor version: Development (3.22)
The *MungeSumstats* package is designed to facilitate the standardisation of GWAS summary statistics. It reformats inputted summary statisitics to include SNP, CHR, BP and can look up these values if any are missing. It also pefrorms dozens of QC and filtering steps to ensure high data quality and minimise inter-study differences.
Author: Alan Murphy [aut, cre] ORCID: 0000-0002-2487-8753 , Brian Schilder [aut, ctb] ORCID: 0000-0001-5949-2191 , Nathan Skene [aut] ORCID: 0000-0002-6807-3180
Maintainer: Alan Murphy <alanmurph94 at hotmail.com>
Citation (from within R, entercitation("MungeSumstats")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MungeSumstats")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MungeSumstats")Follow Installation instructions to use this package in your R session.
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