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Bioconductor - KEGGREST (development version)

KEGGREST

This is the development version of KEGGREST; for the stable release version, see KEGGREST.

Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)

Bioconductor version: Development (3.22)

A package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. Only for academic use by academic users belonging to academic institutions (see ). Note that KEGGREST is based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.

Author: Dan Tenenbaum [aut], Bioconductor Package Maintainer [aut, cre], Martin Morgan [ctb], Kozo Nishida [ctb], Marcel Ramos [ctb], Kristina Riemer [ctb], Lori Shepherd [ctb], Jeremy Volkening [ctb]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("KEGGREST")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("KEGGREST")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KEGGREST")
Details See More Suggests RUnit, BiocGenerics, BiocStyle, knitr, markdown Linking To Enhances Depends On Me ROntoTools, Hiiragi2013 Imports Me ADAM, adSplit, AnnotationDbi, attract, BiocSet, ChIPpeakAnno, EnrichmentBrowser, famat, FELLA, funOmics, gage, ginmappeR, MetaboDynamics, MetaboSignal, MWASTools, PADOG, pairkat, pathview, SBGNview, SMITE, terapadog, transomics2cytoscape, YAPSA, WayFindR Suggests Me Category, categoryCompare, dmGsea, gatom, GenomicRanges, globaltest, iSEEu, MetMashR, MLP, padma, rGREAT, RTopper, SomaScan.db, CALANGO, ggpicrust2, maGUI, phoenics, ReporterScore, scDiffCom Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.


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