This is the development version of HiCParser; for the stable release version, see HiCParser.
Parser for HiC data in RBioconductor version: Development (3.22)
This package is a parser to import HiC data into R. It accepts several type of data: tabular files, Cooler `.cool` or `.mcool` files, Juicer `.hic` files or HiC-Pro `.matrix` and `.bed` files. The HiC data can be several files, for several replicates and conditions. The data is formated in an InteractionSet object.
Author: Zytnicki Matthias [aut], Maigné Ãlise [aut, cre]
Maintainer: Maigné Ãlise <elise.maigne at inrae.fr>
Citation (from within R, entercitation("HiCParser")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("HiCParser")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HiCParser")Follow Installation instructions to use this package in your R session.
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