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Bioconductor - GateFinder (development version)

GateFinder

This is the development version of GateFinder; for the stable release version, see GateFinder.

Projection-based Gating Strategy Optimization for Flow and Mass Cytometry

Bioconductor version: Development (3.22)

Given a vector of cluster memberships for a cell population, identifies a sequence of gates (polygon filters on 2D scatter plots) for isolation of that cell type.

Author: Nima Aghaeepour <naghaeep at gmail.com>, Erin F. Simonds <erin.simonds at gmail.com>

Maintainer: Nima Aghaeepour <naghaeep at gmail.com>

Citation (from within R, enter citation("GateFinder")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GateFinder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GateFinder")
Details biocViews CellBiology, Clustering, FlowCytometry, ImmunoOncology, Software Version 1.29.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License Artistic-2.0 Depends Imports splancs, mvoutlier, methods, stats, diptest, flowCore, flowFP System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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