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Bioconductor - GSRI (development version)

GSRI

This is the development version of GSRI; for the stable release version, see GSRI.

Gene Set Regulation Index

Bioconductor version: Development (3.22)

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Author: Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer

Maintainer: Julian Gehring <jg-bioc at gmx.com>

Citation (from within R, enter citation("GSRI")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GSRI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSRI")
Introduction to the GSRI package: Estimating Regulatory Effects utilizing the Gene Set Regulation Index PDF R Script Reference Manual PDF NEWS Text Details biocViews DifferentialExpression, GeneRegulation, GeneSetEnrichment, Microarray, Software, Transcription Version 2.57.0 In Bioconductor since BioC 2.6 (R-2.11) (15 years) License GPL-3 Depends R (>= 2.14.2), fdrtool Imports methods, graphics, stats, utils, genefilter, Biobase, GSEABase, les(>= 1.1.6) System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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