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Bioconductor - GSEABase (development version)

GSEABase

This is the development version of GSEABase; for the stable release version, see GSEABase.

Gene set enrichment data structures and methods

Bioconductor version: Development (3.22)

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan [aut], Seth Falcon [aut], Robert Gentleman [aut], Paul Villafuerte [ctb] ('GSEABase' vignette translation from Sweave to Rmarkdown / HTML), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GSEABase")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GSEABase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSEABase")

Details biocViews GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Software Version 1.71.0 In Bioconductor since BioC 2.1 (R-2.6) (18 years) License Artistic-2.0 Depends R (>= 2.6.0), BiocGenerics(>= 0.13.8), Biobase(>= 2.17.8), annotate(>= 1.45.3), methods, graph(>= 1.37.2) Imports AnnotationDbi, XML System Requirements URL See More Suggests hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools, testthat, BiocStyle, knitr, RUnit Linking To Enhances Depends On Me AGDEX, BicARE, CCPROMISE, Cepo, cpvSNP, npGSEA, PROMISE, splineTimeR, TissueEnrich, GSVAdata, OSCA.basic Imports Me AUCell, BioCor, canceR, Category, categoryCompare, cosmosR, dreamlet, EnrichmentBrowser, gep2pep, GlobalAncova, GmicR, GSRI, GSVA, mastR, miRSM, mogsa, oppar, PanomiR, phenoTest, PROMISE, RcisTarget, ReportingTools, scTGIF, signatureSearch, singscore, slalom, sparrow, TFutils, TMSig, vissE, zenith, msigdb, clustermole, RVA Suggests Me BiocSet, epiregulon.extra, escape, gage, globaltest, GOstats, GSAR, pathMED, phenoTest, BaseSet Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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