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Bioconductor - GOpro (development version)

GOpro

This is the development version of GOpro; for the stable release version, see GOpro.

Find the most characteristic gene ontology terms for groups of human genes

Bioconductor version: Development (3.22)

Find the most characteristic gene ontology terms for groups of human genes. This package was created as a part of the thesis which was developed under the auspices of MI^2 Group (http://mi2.mini.pw.edu.pl/, https://github.com/geneticsMiNIng).

Author: Lidia Chrabaszcz

Maintainer: Lidia Chrabaszcz <chrabaszcz.lidia at gmail.com>

Citation (from within R, enter citation("GOpro")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GOpro")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOpro")
GOpro: Determine groups of genes and find their characteristic GO term HTML R Script Reference Manual PDF NEWS Text Details biocViews Annotation, Clustering, GO, GeneExpression, GeneSetEnrichment, MultipleComparison, Software Version 1.35.0 In Bioconductor since BioC 3.4 (R-3.3) (8.5 years) License GPL-3 Depends R (>= 3.5.0) Imports AnnotationDbi, dendextend, doParallel, foreach, parallel, org.Hs.eg.db, GO.db, Rcpp, stats, graphics, MultiAssayExperiment, IRanges, S4Vectors System Requirements URL https://github.com/mi2-warsaw/GOpro Bug Reports https://github.com/mi2-warsaw/GOpro/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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