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Bioconductor - ExploreModelMatrix (development version)

ExploreModelMatrix

This is the development version of ExploreModelMatrix; for the stable release version, see ExploreModelMatrix.

Graphical Exploration of Design Matrices

Bioconductor version: Development (3.22)

Given a sample data table and a design formula, ExploreModelMatrix generates an interactive application for exploration of the resulting design matrix. This can be helpful for interpreting model coefficients and constructing appropriate contrasts in (generalized) linear models. Static visualizations can also be generated.

Author: Charlotte Soneson [aut, cre] ORCID: 0000-0003-3833-2169 , Federico Marini [aut] ORCID: 0000-0003-3252-7758 , Michael Love [aut] ORCID: 0000-0001-8401-0545 , Florian Geier [aut] ORCID: 0000-0002-9076-9264 , Michael Stadler [aut] ORCID: 0000-0002-2269-4934

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("ExploreModelMatrix")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ExploreModelMatrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExploreModelMatrix")
Details biocViews DifferentialExpression, ExperimentalDesign, Regression, ShinyApps, Software Version 1.21.0 In Bioconductor since BioC 3.11 (R-4.0) (5 years) License MIT + file LICENSE Depends Imports shiny (>= 1.5.0), shinydashboard, DT, cowplot, utils, dplyr, magrittr, tidyr, ggplot2, stats, methods, rintrojs, scales, tibble, MASS, limma, S4Vectors, shinyjs System Requirements URL https://github.com/csoneson/ExploreModelMatrix Bug Reports https://github.com/csoneson/ExploreModelMatrix/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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