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Bioconductor - DirichletMultinomial (development version)

DirichletMultinomial

This is the development version of DirichletMultinomial; for the stable release version, see DirichletMultinomial.

Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

Bioconductor version: Development (3.22)

Dirichlet-multinomial mixture models can be used to describe variability in microbial metagenomic data. This package is an interface to code originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2): 1-15, as discussed further in the man page for this package, ?DirichletMultinomial.

Author: Martin Morgan [aut, cre] ORCID: 0000-0002-5874-8148

Maintainer: Martin Morgan <mtmorgan.xyz at gmail.com>

Citation (from within R, enter citation("DirichletMultinomial")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DirichletMultinomial")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DirichletMultinomial")
DirichletMultinomial for Clustering and Classification of Microbiome Data HTML R Script Reference Manual PDF Details See More Suggests lattice, parallel, MASS, RColorBrewer, DT, knitr, rmarkdown, BiocStyle Linking To Enhances Depends On Me Imports Me mia, miaViz, TFBSTools Suggests Me bluster, MicrobiotaProcess Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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