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Bioconductor - DegNorm (development version)

DegNorm

This is the development version of DegNorm; for the stable release version, see DegNorm.

DegNorm: degradation normalization for RNA-seq data

Bioconductor version: Development (3.22)

This package performs degradation normalization in bulk RNA-seq data to improve differential expression analysis accuracy.

Author: Bin Xiong and Ji-Ping Wang

Maintainer: Ji-Ping Wang <jzwang at northwestern.edu>

Citation (from within R, enter citation("DegNorm")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DegNorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DegNorm")
Details biocViews Alignment, BatchEffect, Coverage, DataImport, DifferentialExpression, GeneExpression, ImmunoOncology, Normalization, QualityControl, RNASeq, Sequencing, Software Version 1.19.0 In Bioconductor since BioC 3.12 (R-4.0) (4.5 years) License LGPL (>= 3) Depends R (>= 4.0.0), methods Imports Rcpp (>= 1.0.2), GenomicFeatures, txdbmaker, parallel, foreach, S4Vectors, doParallel, Rsamtools(>= 1.31.2), GenomicAlignments, heatmaply, data.table, stats, ggplot2, GenomicRanges, IRanges, plyr, plotly, utils, viridis System Requirements URL Bug Reports https://github.com/jipingw/DegNorm/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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