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Showing content from https://www.bioconductor.org/packages/devel/bioc/html/DEGseq.html below:

Bioconductor - DEGseq (development version)

DEGseq

This is the development version of DEGseq; for the stable release version, see DEGseq.

Identify Differentially Expressed Genes from RNA-seq data

Bioconductor version: Development (3.22)

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

Author: Likun Wang <wanglk at pku.edu.cn>, Xiaowo Wang <xwwang at tsinghua.edu.cn> and Xuegong Zhang <zhangxg at tsinghua.edu.cn>.

Maintainer: Likun Wang <wanglk at pku.edu.cn>

Citation (from within R, enter citation("DEGseq")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DEGseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEGseq")
Details biocViews DifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software Version 1.63.0 In Bioconductor since BioC 2.5 (R-2.10) (15.5 years) License LGPL (>=2) Depends R (>= 2.8.0), qvalue, methods Imports graphics, grDevices, methods, stats, utils System Requirements URL See More Suggests Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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