This is the development version of Cepo; for the stable release version, see Cepo.
Cepo for the identification of differentially stable genesBioconductor version: Development (3.22)
Defining the identity of a cell is fundamental to understand the heterogeneity of cells to various environmental signals and perturbations. We present Cepo, a new method to explore cell identities from single-cell RNA-sequencing data using differential stability as a new metric to define cell identity genes. Cepo computes cell-type specific gene statistics pertaining to differential stable gene expression.
Author: Hani Jieun Kim [aut, cre] ORCID: 0000-0003-1844-3275 , Kevin Wang [aut] ORCID: 0000-0003-2615-6102
Maintainer: Hani Jieun Kim <hani.kim127 at gmail.com>
Citation (from within R, entercitation("Cepo")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Cepo")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Cepo")Follow Installation instructions to use this package in your R session.
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