This is the development version of CNEr; for the stable release version, see CNEr.
CNE Detection and VisualizationBioconductor version: Development (3.22)
Large-scale identification and advanced visualization of sets of conserved noncoding elements.
Author: Ge Tan <ge_tan at live.com>
Maintainer: Ge Tan <ge_tan at live.com>
Citation (from within R, entercitation("CNEr")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CNEr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation Details biocViews DataImport, GeneRegulation, Software, Visualization Version 1.45.0 In Bioconductor since BioC 2.14 (R-3.1) (11 years) License GPL-2 | file LICENSE Depends R (>= 3.5.0) Imports Biostrings(>= 2.33.4), pwalign, DBI (>= 0.7), RSQLite (>= 0.11.4), GenomeInfoDb(>= 1.1.3), GenomicRanges(>= 1.23.16), rtracklayer(>= 1.25.5), XVector(>= 0.5.4), GenomicAlignments(>= 1.1.9), methods, S4Vectors(>= 0.13.13), IRanges(>= 2.5.27), readr (>= 0.2.2), BiocGenerics, tools, parallel, reshape2 (>= 1.4.1), ggplot2 (>= 2.1.0), poweRlaw (>= 0.60.3), annotate(>= 1.50.0), GO.db(>= 3.3.0), R.utils (>= 2.3.0), KEGGREST(>= 1.14.0) System Requirements URL https://github.com/ge11232002/CNEr Bug Reports https://github.com/ge11232002/CNEr/issues See More Suggests Gviz(>= 1.7.4), BiocStyle, knitr, rmarkdown, testthat, BSgenome.Drerio.UCSC.danRer10, BSgenome.Hsapiens.UCSC.hg38, TxDb.Drerio.UCSC.danRer10.refGene, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Ggallus.UCSC.galGal3 Linking To S4Vectors, IRanges, XVector Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package ArchivesFollow Installation instructions to use this package in your R session.
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