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Bioconductor - BSgenomeForge (development version)

BSgenomeForge

This is the development version of BSgenomeForge; for the stable release version, see BSgenomeForge.

Forge your own BSgenome data package

Bioconductor version: Development (3.22)

A set of tools to forge BSgenome data packages. Supersedes the old seed-based tools from the BSgenome software package. This package allows the user to create a BSgenome data package in one function call, simplifying the old seed-based process.

Author: Hervé Pagès [aut, cre], Atuhurira Kirabo Kakopo [aut], Emmanuel Chigozie Elendu [ctb], Prisca Chidimma Maduka [ctb]

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("BSgenomeForge")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BSgenomeForge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BSgenomeForge")
Details biocViews Alignment, Annotation, DataImport, DataRepresentation, GenomeAnnotation, GenomeAssembly, Infrastructure, SequenceMatching, Sequencing, Software Version 1.9.1 In Bioconductor since BioC 3.17 (R-4.3) (2 years) License Artistic-2.0 Depends R (>= 4.3.0), methods, BiocGenerics, IRanges, Seqinfo, GenomeInfoDb(>= 1.45.5), Biostrings(>= 2.77.2), BSgenome(>= 1.77.1) Imports utils, stats, Biobase, S4Vectors, GenomicRanges(>= 1.61.1), BiocIO, rtracklayer(>= 1.69.1) System Requirements URL https://bioconductor.org/packages/BSgenomeForge Bug Reports https://github.com/Bioconductor/BSgenomeForge/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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