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Bioconductor - AnVILPublish (development version)

AnVILPublish

This is the development version of AnVILPublish; for the stable release version, see AnVILPublish.

Publish Packages and Other Resources to AnVIL Workspaces

Bioconductor version: Development (3.22)

Use this package to create or update AnVIL workspaces from resources such as R / Bioconductor packages. The metadata about the package (e.g., select information from the package DESCRIPTION file and from vignette YAML headings) are used to populate the 'DASHBOARD'. Vignettes are translated to python notebooks ready for evaluation in AnVIL.

Author: Marcel Ramos [aut, cre] ORCID: 0000-0002-3242-0582 , Martin Morgan [aut] ORCID: 0000-0002-5874-8148 , Kayla Interdonato [aut], Vincent Carey [ctb] ORCID: 0000-0003-4046-0063

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("AnVILPublish")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AnVILPublish")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnVILPublish")
Publishing R / Bioconductor packages to AnVIL Workspaces HTML R Script Reference Manual PDF NEWS Text Details biocViews Infrastructure, Software Version 1.19.0 In Bioconductor since BioC 3.12 (R-4.0) (4.5 years) License Artistic-2.0 Depends Imports AnVIL, AnVILGCP, BiocBaseUtils, BiocManager, httr, jsonlite, rmarkdown, yaml, readr, whisker, tools, utils, stats System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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