This is the development version of AnVIL; for the stable release version, see AnVIL.
Bioconductor on the AnVIL compute environmentBioconductor version: Development (3.22)
The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The AnVIL package provides programatic access to the Dockstore, Leonardo, Rawls, TDR, and Terra RESTful programming interfaces. For platform-specific user-level functionality, see either the AnVILGCP or AnVILAz package.
Author: Marcel Ramos [aut, cre] ORCID: 0000-0002-3242-0582 , Martin Morgan [aut] ORCID: 0000-0002-5874-8148 , Kayla Interdonato [aut], Yubo Cheng [aut], Nitesh Turaga [aut], BJ Stubbs [ctb], Vincent Carey [ctb], Sehyun Oh [ctb], Sweta Gopaulakrishnan [ctb], Valerie Obenchain [ctb]
Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>
Citation (from within R, entercitation("AnVIL")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("AnVIL")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AnVIL")
Details biocViews Infrastructure, Software Version 1.21.5 In Bioconductor since BioC 3.11 (R-4.0) (5 years) License Artistic-2.0 Depends R (>= 4.5.0), dplyr, AnVILBase Imports stats, utils, methods, futile.logger, jsonlite, httr, rapiclient, yaml, tibble, shiny, DT, miniUI, htmltools, BiocBaseUtils System Requirements URL See More Suggests knitr, rmarkdown, testthat, withr, readr, BiocStyle, devtools, AnVILAz, AnVILGCP, lifecycle Linking To Enhances Depends On Me cBioPortalData Imports Me AnVILPublish, AnVILWorkflow, bedbaser, terraTCGAdata Suggests Me AnVILBase, AnVILGCP Links To Me Build Report Build Report Package Archives
Follow Installation instructions to use this package in your R session.
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