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Bioconductor - AllelicImbalance (development version)

AllelicImbalance

This is the development version of AllelicImbalance; for the stable release version, see AllelicImbalance.

Investigates Allele Specific Expression

Bioconductor version: Development (3.22)

Provides a framework for allelic specific expression investigation using RNA-seq data.

Author: Jesper R Gadin, Lasse Folkersen

Maintainer: Jesper R Gadin <j.r.gadin at gmail.com>

Citation (from within R, enter citation("AllelicImbalance")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("AllelicImbalance")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AllelicImbalance")
Details biocViews Genetics, Infrastructure, Sequencing, Software Version 1.47.0 In Bioconductor since BioC 2.13 (R-3.0) (11.5 years) License GPL-3 Depends R (>= 4.0.0), grid, GenomicRanges(>= 1.31.8), SummarizedExperiment(>= 0.2.0), GenomicAlignments(>= 1.15.6) Imports methods, BiocGenerics, AnnotationDbi, BSgenome(>= 1.47.3), VariantAnnotation(>= 1.25.11), Biostrings(>= 2.47.6), S4Vectors(>= 0.17.25), IRanges(>= 2.13.12), Rsamtools(>= 1.99.3), GenomicFeatures(>= 1.31.3), Gviz, lattice, latticeExtra, gridExtra, seqinr, GenomeInfoDb, nlme System Requirements URL https://github.com/pappewaio/AllelicImbalance Bug Reports https://github.com/pappewaio/AllelicImbalance/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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