Showing content from https://www.bioconductor.org/packages/devel/bioc/html/../vignettes/CAMERA/inst/doc/CAMERA.R below:
### R code from vignette source 'CAMERA.Rnw' ################################################### ### code chunk number 1: EICPspec1 ################################################### library(CAMERA) file <- system.file('mzML/MM14.mzML', package = "CAMERA") xs <- xcmsSet(file, method="centWave",ppm=30, peakwidth=c(5,10)) an <- xsAnnotate(xs) an <- groupFWHM(an) an <- findAdducts(an, polarity="positive") plotEICs(an, pspec=2, maxlabel=5) ################################################### ### code chunk number 2: Pspec1 ################################################### plotPsSpectrum(an, pspec=2, maxlabel=5)
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