Showing content from https://www.bioconductor.org/packages/devel/bioc/html/../vignettes/BiocCheck/inst/doc/BiocCheck.R below:
## ----include=FALSE,results="hide",message=FALSE,warning=FALSE----------------- library(BiocStyle) ## ----include=TRUE,results="hide",message=FALSE,warning=FALSE------------------ library(BiocCheck) ## ----eval=FALSE--------------------------------------------------------------- # BiocCheck(" ") ## ----eval = FALSE------------------------------------------------------------- # if (!require("BiocManager", quietly = TRUE)) # install.packages("BiocManager") # # BiocManager::install("BiocCheck") ## ----reformat_code, eval = FALSE---------------------------------------------- # ## Install styler if necessary # if (!requireNamespace("styler", quietly = TRUE)) { # install.packages("styler") # } # ## Automatically re-format the R code in your package # styler::style_pkg(transformers = styler::tidyverse_style(indent_by = 4)) ## ----eval=FALSE--------------------------------------------------------------- # BiocCheckGitClone("packageDir") ## ----------------------------------------------------------------------------- BiocCheck:::.HIDDEN_FILE_EXTS ## ----------------------------------------------------------------------------- library(utils) readCitationFile( system.file("CITATION", package = "GenomicRanges") ) ## ----sessionInfo-------------------------------------------------------------- sessionInfo()
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