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Bioconductor - viper (development version)

viper

This is the development version of viper; for the stable release version, see viper.

Virtual Inference of Protein-activity by Enriched Regulon analysis

Bioconductor version: Development (3.22)

Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms

Author: Mariano J Alvarez <reef103 at gmail.com>

Maintainer: Mariano J Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("viper")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("viper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("viper")
Details biocViews FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology Version 1.43.0 In Bioconductor since BioC 2.14 (R-3.1) (11 years) License file LICENSE Depends R (>= 2.14.0), Biobase, methods Imports mixtools, stats, parallel, e1071, KernSmooth System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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