This is the development version of txcutr; for the stable release version, see txcutr.
Transcriptome CUTteRBioconductor version: Development (3.22)
Various mRNA sequencing library preparation methods generate sequencing reads specifically from the transcript ends. Analyses that focus on quantification of isoform usage from such data can be aided by using truncated versions of transcriptome annotations, both at the alignment or pseudo-alignment stage, as well as in downstream analysis. This package implements some convenience methods for readily generating such truncated annotations and their corresponding sequences.
Author: Mervin Fansler [aut, cre] ORCID: 0000-0002-4108-4218
Maintainer: Mervin Fansler <fanslerm at mskcc.org>
Citation (from within R, entercitation("txcutr")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("txcutr")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("txcutr")Follow Installation instructions to use this package in your R session.
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