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Bioconductor - trio (development version)

trio

This is the development version of trio; for the stable release version, see trio.

Testing of SNPs and SNP Interactions in Case-Parent Trio Studies

Bioconductor version: Development (3.22)

Testing SNPs and SNP interactions with a genotypic TDT. This package furthermore contains functions for computing pairwise values of LD measures and for identifying LD blocks, as well as functions for setting up matched case pseudo-control genotype data for case-parent trios in order to run trio logic regression, for imputing missing genotypes in trios, for simulating case-parent trios with disease risk dependent on SNP interaction, and for power and sample size calculation in trio data.

Author: Holger Schwender, Qing Li, Philipp Berger, Christoph Neumann, Margaret Taub, Ingo Ruczinski

Maintainer: Holger Schwender <holger.schw at gmx.de>

Citation (from within R, enter citation("trio")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("trio")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("trio")
Trio Logic Regression and genotypic TDT PDF R Script Reference Manual PDF Details biocViews GeneticVariability, Genetics, Microarray, SNP, Software Version 3.47.0 In Bioconductor since BioC 2.13 (R-3.0) (11.5 years) License LGPL-2 Depends R (>= 3.0.1) Imports grDevices, graphics, methods, stats, survival, utils, siggenes, LogicReg (>= 1.6.1), data.table System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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