This is the development version of traviz; for the stable release version, see traviz.
Trajectory functions for visualization and interpretation.Bioconductor version: Development (3.22)
traviz provides a suite of functions to plot trajectory related objects from Bioconductor packages. It allows plotting trajectories in reduced dimension, as well as averge gene expression smoothers as a function of pseudotime. Asides from general utility functions, traviz also allows plotting trajectories estimated by Slingshot, as well as smoothers estimated by tradeSeq. Furthermore, it allows for visualization of Slingshot trajectories using ggplot2.
Author: Hector Roux de Bezieux [aut, ctb], Kelly Street [aut, ctb], Koen Van den Berge [aut, cre]
Maintainer: Koen Van den Berge <koen.vdberge at gmail.com>
Citation (from within R, entercitation("traviz")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("traviz")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation Details biocViews GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcriptomics, Visualization Version 1.15.0 In Bioconductor since BioC 3.14 (R-4.1) (3.5 years) License MIT + file LICENSE Depends R (>= 4.0) Imports ggplot2, viridis, mgcv, SingleCellExperiment, slingshot, princurve, Biobase, methods, RColorBrewer, SummarizedExperiment, grDevices, graphics, rgl System Requirements URL See More Package ArchivesFollow Installation instructions to use this package in your R session.
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