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Bioconductor - tidyomics (development version)

tidyomics

This is the development version of tidyomics; for the stable release version, see tidyomics.

Easily install and load the tidyomics ecosystem

Bioconductor version: Development (3.22)

The tidyomics ecosystem is a set of packages for ’omic data analysis that work together in harmony; they share common data representations and API design, consistent with the tidyverse ecosystem. The tidyomics package is designed to make it easy to install and load core packages from the tidyomics ecosystem with a single command.

Author: Stefano Mangiola [aut, cre] ORCID: 0000-0001-7474-836X , Michael Love [aut] ORCID: 0000-0001-8401-0545 , William Hutchison [aut] ORCID: 0009-0001-6242-4269

Maintainer: Stefano Mangiola <mangiolastefano at gmail.com>

Citation (from within R, enter citation("tidyomics")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tidyomics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tidyomics")
Details biocViews AssayDomain, Clustering, DifferentialExpression, GeneExpression, Infrastructure, Normalization, QualityControl, RNASeq, Sequencing, Software, Transcription, Transcriptomics Version 1.5.0 In Bioconductor since BioC 3.19 (R-4.4) (1 year) License MIT + file LICENSE Depends R (>= 4.2) Imports tidySummarizedExperiment, tidySingleCellExperiment, tidyseurat, tidybulk, plyranges, nullranges, purrr, rlang, stringr, cli, utils System Requirements URL https://github.com/tidyomics/tidyomics Bug Reports https://github.com/tidyomics/tidyomics/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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