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Bioconductor - stageR (development version)

stageR

This is the development version of stageR; for the stable release version, see stageR.

stageR: stage-wise analysis of high throughput gene expression data in R

Bioconductor version: Development (3.22)

The stageR package allows automated stage-wise analysis of high-throughput gene expression data. The method is published in Genome Biology at https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1277-0

Author: Koen Van den Berge and Lieven Clement

Maintainer: Koen Van den Berge <koen.vdberge at gmail.com>

Citation (from within R, enter citation("stageR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("stageR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("stageR")
stageR: stage-wise analysis of high-throughput gene expression data in R HTML R Script Reference Manual PDF Details biocViews Software, StatisticalMethod Version 1.31.0 In Bioconductor since BioC 3.6 (R-3.4) (7.5 years) License GNU General Public License version 3 Depends R (>= 3.4), SummarizedExperiment Imports methods, stats System Requirements URL See More Suggests knitr, rmarkdown, BiocStyle, methods, Biobase, edgeR, limma, DEXSeq, testthat Linking To Enhances Depends On Me rnaseqDTU Imports Me Suggests Me MethReg, muscat, satuRn Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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