This is the development version of squallms; for the stable release version, see squallms.
Speedy quality assurance via lasso labeling for LC-MS dataBioconductor version: Development (3.22)
squallms is a Bioconductor R package that implements a "semi-labeled" approach to untargeted mass spectrometry data. It pulls in raw data from mass-spec files to calculate several metrics that are then used to label MS features in bulk as high or low quality. These metrics of peak quality are then passed to a simple logistic model that produces a fully-labeled dataset suitable for downstream analysis.
Author: William Kumler [aut, cre, cph] ORCID: 0000-0002-5022-8009
Maintainer: William Kumler <wkumler at uw.edu>
Citation (from within R, entercitation("squallms")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("squallms")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("squallms")Follow Installation instructions to use this package in your R session.
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