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Bioconductor - sevenbridges (development version)

sevenbridges

This is the development version of sevenbridges; for the stable release version, see sevenbridges.

Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R

Bioconductor version: Development (3.22)

R client and utilities for Seven Bridges platform API, from Cancer Genomics Cloud to other Seven Bridges supported platforms.

Author: Phil Webster [aut, cre], Soner Koc [aut] ORCID: 0000-0002-0772-6600 , Nan Xiao [aut], Tengfei Yin [aut], Dusan Randjelovic [ctb], Emile Young [ctb], Velsera [cph, fnd]

Maintainer: Phil Webster <phil.webster at velsera.com>

Citation (from within R, enter citation("sevenbridges")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("sevenbridges")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sevenbridges")
Complete Guide for Seven Bridges API R Client HTML R Script Creating Your Docker Container and Command Line Interface (with docopt) HTML R Script Describe and Execute CWL Tools/Workflows in R HTML R Script Find Data on CGC via Data Browser and Datasets API HTML R Script IDE Container: RStudio Server, Shiny Server, and More HTML R Script Master Tutorial: Use R for Cancer Genomics Cloud HTML R Script Reference Manual PDF NEWS Text LICENSE Text Details biocViews DataImport, Software, ThirdPartyClient Version 1.39.0 In Bioconductor since BioC 3.3 (R-3.3) (9 years) License Apache License 2.0 | file LICENSE Depends methods, utils, stats Imports httr, jsonlite, yaml, objectProperties, stringr, S4Vectors, docopt, curl, uuid, data.table System Requirements URL https://www.sevenbridges.com https://sbg.github.io/sevenbridges-r/ https://github.com/sbg/sevenbridges-r Bug Reports https://github.com/sbg/sevenbridges-r/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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