This is the development version of scTHI; for the stable release version, see scTHI.
Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing dataBioconductor version: Development (3.22)
scTHI is an R package to identify active pairs of ligand-receptors from single cells in order to study,among others, tumor-host interactions. scTHI contains a set of signatures to classify cells from the tumor microenvironment.
Author: Francesca Pia Caruso [aut], Michele Ceccarelli [aut, cre]
Maintainer: Michele Ceccarelli <m.ceccarelli at gmail.com>
Citation (from within R, entercitation("scTHI")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("scTHI")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scTHI")Follow Installation instructions to use this package in your R session.
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