A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from https://www.bioconductor.org/packages/devel/bioc/html/../html/scBubbletree.html below:

Bioconductor - scBubbletree (development version)

scBubbletree

This is the development version of scBubbletree; for the stable release version, see scBubbletree.

Quantitative visual exploration of scRNA-seq data

Bioconductor version: Development (3.22)

scBubbletree is a quantitative method for the visual exploration of scRNA-seq data, preserving key biological properties such as local and global cell distances and cell density distributions across samples. It effectively resolves overplotting and enables the visualization of diverse cell attributes from multiomic single-cell experiments. Additionally, scBubbletree is user-friendly and integrates seamlessly with popular scRNA-seq analysis tools, facilitating comprehensive and intuitive data interpretation.

Author: Simo Kitanovski [aut, cre]

Maintainer: Simo Kitanovski <simokitanovski at gmail.com>

Citation (from within R, enter citation("scBubbletree")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("scBubbletree")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scBubbletree")
Details biocViews Clustering, RNASeq, SingleCell, Software, Transcriptomics, Visualization Version 1.11.0 In Bioconductor since BioC 3.16 (R-4.2) (2.5 years) License GPL-3 + file LICENSE Depends R (>= 4.2.0) Imports reshape2, BiocParallel, ape, scales, Seurat, ggplot2, ggtree, patchwork, proxy, methods, stats, base, utils, dplyr System Requirements Python (>= 3.6), leidenalg (>= 0.8.2) URL https://github.com/snaketron/scBubbletree Bug Reports https://github.com/snaketron/scBubbletree/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4